PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_768.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 339aa    MW: 36563.2 Da    PI: 10.035
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_768.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.9e-31266323359
                                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                  D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+++++tYegeH+h+
  evm.model.supercontig_768.1 266 DEYSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERAVDDPSMLIVTYEGEHRHT 323
                                  9************************9888****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.4E-20213262IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.1E-33252325IPR003657WRKY domain
PROSITE profilePS5081131.514259325IPR003657WRKY domain
SuperFamilySSF1182908.24E-27262325IPR003657WRKY domain
SMARTSM007743.0E-37264324IPR003657WRKY domain
PfamPF031069.4E-27266322IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAVDLMSFPK MDDQTAIQEA ASQGLRGMEH LIRLLSHQPN TENHVDCTDL TDLTVSKFKK  60
VISLLNRTGH ARFRRGPLQS SSSSSSPSSS SASLSLPHSQ TLTLAPATVH PAPFNTQVVN  120
PSAVTAPASF VQSHPPQSLT LDFTKPNLFG SKTKSAELEF TKESFSVSSS SSFMSSAITG  180
DGSVSNGKQG PSIFLAPAAP SSGKPPLSAA PYKKRCHEHE HSDDMSGKLS GSASGKCHCS  240
KRRKNRVKRT IRVPAISSKI ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC STVRGCPARK  300
HVERAVDDPS MLIVTYEGEH RHTQPALQDN VGLVFEST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-212613261478Probable WRKY transcription factor 4
2lex_A2e-212613261478Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007011614.11e-174WRKY protein isoform 1
SwissprotQ9SV151e-162WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLA0A140H8T81e-176A0A140H8T8_MANES; WRKY transcription factor 84
STRINGscaffold_701056.11e-160(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25082772
Representative plantOGRP35571127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-149WRKY DNA-binding protein 11